List of changes in-between qpformat releases.

version 0.10.8

  • fix: wavelength could not be extracted for some phasics files (section name “analyse data” vs “analyse data v1”)

  • fix: time could not be parsed due to comma instead of dot in phasics meta data

version 0.10.7

  • ci: migrate to GHA

  • docs: fix sphinx build

  • setup: test is deprecated

version 0.10.6

  • maintenance release

version 0.10.5

  • setup: bump qpimage from 0.6.1 to 0.6.2

  • setup: change dependency of scikit-image to tifffile 2020.5.25

  • ref: make code work with latest version of tifffile

version 0.10.4

  • setup: bump qpimage from 0.5.0 to 0.6.1

version 0.10.3

  • fix: missing keyword argument idx in SingleTifHolo.get_time

  • fix: correctly pass precision to phasics and hologram zip file formats

  • fix: add file size to dataset identifier hashing process

  • example: add conversion script to hdf5 qpimage data

version 0.10.2

  • fix: SeriesFolder did not pass on holo_kw when loading hologram data

version 0.10.1

  • fix: SeriesHdf5Qpimage did not correctly load meta data “time”

version 0.10.0

  • feat: allow to specify a time interval or a series slice in SeriesData.saveh5

  • fix: seek to zero before computing a data identifier for an io.IOBase object

  • fix: only write series identifier in SeriesData.saveh5 if the keyword arguments for slice extraction are not set

  • ref: fix deprecated .value (h5py)

  • tests: fix date extraction from zip file

version 0.9.0

  • feat: allow to specify a slice in SeriesData.saveh5 (useful when only a specific region needs to be extracted)

version 0.8.0

  • feat: allow tracking the progress of SeriesData.saveh5 using multiprocessing.Value objects

version 0.7.1

  • docs: fix missing changelog files

version 0.7.0

  • feat: added command-line entry point “qpinfo”

  • feat: support subjoined QPSeries file format

  • docs: minor update

version 0.6.4

  • fix: ignore None or nan values in given meta data

version 0.6.3

  • enh: introduce BadFileFormatError

version 0.6.2

  • maintenance release

version 0.6.1

  • tests: fix bad identification of data types

version 0.6.0

  • BREAKING CHANGE: SeriesFolder file format does not load data files recursively anymore

version 0.5.1

  • fix: falsely detected datasets in SeriesFolder file format

version 0.5.0

  • feat: use file modification time as fallback for TIFF files when the file format does not implement get_time

  • fix: return “nan” instead of “0” when the time is not defined for a measurement

version 0.4.4

  • fix: SeriesFolder file format should not support folders containing no usable data

  • fix: verify file format given by user

version 0.4.3

  • fix: “identifier” not always set for generated instances of QPImage

version 0.4.2

  • fix: implement get_name method for SeriesFolder format

  • enh: start identifier/name indexing at 1 instead of 0

version 0.4.1

  • fix: do not allow intensity values less than zero for SingleTifPhasics

version 0.4.0

  • feat: extract meta data from QPSeries/QPImage data files

version 0.3.5

  • fix: single_tif_phaiscs (SID4Bio) contains two phase images, the second of which is recorded at a different time point than the intensity image. The first image is recorded in wavelengths and not in nanometers and thus is converted using phasics metadata first. If this metadata is not available, the second image is used.

version 0.3.4

  • fix: qpimage file formats: override identifiers (clean solution)

  • fix: add check for valid meta_data keys

  • docs: document attributes of SeriesData

version 0.3.3

  • fix: qpimage file formats: identifiers were not unique, but simply copied from the input hdf5 file

version 0.3.2

  • setup: add qpimage version dependency

version 0.3.1

  • ci: automate PyPI release with travis-ci

version 0.3.0

  • docs: automatically document all file format classes

  • docs: add introduction and file format overview

  • tests: improve coverage

version 0.2.1

  • fix: regression when loading data from zip file

version 0.2.0

  • drop support for Python 3.5

  • fix: SeriesHdf5Qpimage blocked hdf5 file for reading

  • fix: background datasets did not get hologram keyword arguments

  • feat: allow to cast input data type (qpimage version 0.2.0)

version 0.1.6

  • code cleanup

version 0.1.5

  • fix: raw phasics tif files were not ignored in SeriesFolder (#3)

  • feat: reduce length of dataset hashes to six chars for user convenience

  • feat: switch order of name and index in identifier for user convenience

version 0.1.4

  • feat: new file format for zipped hologram tif files

  • feat: add “storage_type” property describing which type of data is stored originally in a dataset

  • feat: add hologram file formats: HyperSpy and tif-based

  • fix: use hologram keyword arguments to generate dataset identifer

version 0.1.3

  • feat: save memory by hard-linking background image data in QPSeries

  • fix: format series and single hdf5: override raw meta data

  • fix: include background data in determination of data set identifiers

version 0.1.2

  • feat: change API for SingleData (“idx=0” for user convenience)

  • feat: implement SeriesData.saveh5 (export as qpimage.QPSeries) (#2)

  • feat: add unique part of file name to SeriesFolder image identifiers (#2)

  • feat: extract identifiers from hdf5 files

version 0.1.1

  • feat: support pathlib

  • feat: add SeriesData.identifier

version 0.1.0

  • initial release